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Description : not classified & original description: none
Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Spa_g20368 | |
| Cluster | HCCA: Cluster_78 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G55530 | No alias | RING/U-box superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G40830 | RHC1A | RING-H2 finger C1A | 0.03 | OrthoFinder output from all 47 species | |
| AT3G10815 | No alias | RING/U-box superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT3G13430 | No alias | RING/U-box superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT4G26400 | No alias | RING/U-box superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G01980 | No alias | RING/U-box superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g008105 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g017038 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g066616 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g088306 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g103586 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g01231 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g03172 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g04888 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g03741 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g08904 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g22643 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g44017 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g46210 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g01998 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g03081 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g29180 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene04099.t1 | Aspi01Gene04099 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene15225.t1 | Aspi01Gene15225 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene58136.t1 | Aspi01Gene58136 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene58651.t1 | Aspi01Gene58651 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.06G020800.1 | Ceric.06G020800 | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.07G095600.1 | Ceric.07G095600 | not classified & original description: pacid=50626992... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G083100.1 | Ceric.14G083100 | not classified & original description: pacid=50633279... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.16G066200.1 | Ceric.16G066200 | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000880.42 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g07514 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g26594 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g01127 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g01160 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g02398 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g11152 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g14500 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g27311 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01015309001 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025505001 | ATCRT1 | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01029345001 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_12946 | No alias | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_22124 | No alias | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_22125 | No alias | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_29787 | No alias | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_30381 | RHC1A | Probable E3 ubiquitin-protein ligase RHC2A... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g44240.1 | LOC_Os01g44240 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g41520.1 | RHC1A, LOC_Os05g41520 | Probable E3 ubiquitin-protein ligase RHC1A... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os07g43740.1 | LOC_Os07g43740 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os08g38060.1 | LOC_Os08g38060 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g16162 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g22017 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g57906 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g05536 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g11310 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g28304 | RHC1A | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
| MA_170709g0010 | No alias | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_19897g0010 | No alias | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| MA_79051g0010 | No alias | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... | 0.02 | OrthoFinder output from all 47 species | |
| Mp7g15970.1 | No alias | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g14693 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g25713 | No alias | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Ore_g10219 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g15069 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g37982 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g41837 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g41838 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g01325 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g24945 | CIP8 | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g29204 | RHC1A | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g52386 | No alias | E3 ubiquitin ligase *(SNIPER) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g08830 | RHC1A | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g56162 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012146 | No alias | not classified & original description: CDS=1-969 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0040.g012286 | No alias | not classified & original description: CDS=1-1674 | 0.03 | OrthoFinder output from all 47 species | |
| Smo18753 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g007895.1.1 | Solyc05g007895 | E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g018050.1.1 | Solyc05g018050 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g04049 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g08969 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g40688 | RHC1A | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e011788_P002 | Zm00001e011788 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e016135_P001 | Zm00001e016135 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e024003_P001 | Zm00001e024003 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e038273_P001 | Zm00001e038273 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |