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  5. Spa_g13994

Spa_g13994


Description : component *(uL29c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0004758 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004758_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g13994
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00170150 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
AT5G65220 No alias Ribosomal L29 family protein 0.17 OrthoFinder output from all 47 species
Aev_g03513 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g00554 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g34521 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g00731 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g32624 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Aspi01Gene69557.t1 Aspi01Gene69557 component *(uL29c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0048.g030677 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Cba_g00374 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.34G037300.1 Ceric.34G037300 component *(uL29c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Cre06.g259850 No alias No description available 0.09 OrthoFinder output from all 47 species
Dac_g03965 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g13501 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Ehy_g20187 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os02g51790.1 LOC_Os02g51790 component psRPL29 of large ribosomal subunit proteome 0.13 OrthoFinder output from all 47 species
Len_g04060 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Len_g45621 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Lfl_g16498 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
MA_10268152g0010 No alias component psRPL29 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
MA_10431457g0010 No alias component psRPL29 of large ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
MA_42151g0010 No alias component psRPL29 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Mp4g10390.1 No alias component psRPL29 of large ribosomal subunit proteome 0.19 OrthoFinder output from all 47 species
Msp_g08238 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Nbi_g13470 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Ore_g04033 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Pp3c15_20650V3.1 Pp3c15_20650 Ribosomal L29 family protein 0.06 OrthoFinder output from all 47 species
Pp3c9_19800V3.1 Pp3c9_19800 Ribosomal L29 family protein 0.05 OrthoFinder output from all 47 species
Ppi_g10973 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008714 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Sam_g12929 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Sam_g12930 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc06g072470.4.1 Solyc06g072470 component psRPL29 of large ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Tin_g03662 No alias component *(uL29c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e023859_P001 Zm00001e023859 component psRPL29 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030091 protein repair IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001854 Ribosomal_L29/L35 63 118
No external refs found!