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  5. Aev_g20290

Aev_g20290


Description : heavy chain of clathrin triskelion & original description: none


Gene families : OG0000308 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000308_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g20290
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00168430 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 39 species
AT3G11130 No alias Clathrin, heavy chain 0.01 OrthoFinder output from all 39 species
Adi_g011980 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 39 species
Ala_g12409 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 39 species
Als_g14456 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 39 species
Als_g47906 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Als_g61224 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Aob_g02408 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 39 species
Aop_g08144 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Aop_g60506 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Aspi01Gene19603.t2 Aspi01Gene19603 heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 39 species
Aspi01Gene53196.t1 Aspi01Gene53196 heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Azfi_s0021.g015746 No alias heavy chain of clathrin triskelion & original... 0.02 OrthoFinder output from all 39 species
Azfi_s0078.g038251 No alias heavy chain of clathrin triskelion & original... 0.02 OrthoFinder output from all 39 species
Cba_g07033 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Cba_g20699 No alias not classified & original description: none 0.03 OrthoFinder output from all 39 species
Cba_g27949 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 39 species
Cba_g27950 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 39 species
Cba_g27951 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Ceric.06G067200.1 Ceric.06G067200 heavy chain of clathrin triskelion & original... 0.01 OrthoFinder output from all 39 species
Ceric.1Z011000.1 Ceric.1Z011000 heavy chain of clathrin triskelion & original... 0.06 OrthoFinder output from all 39 species
Ceric.1Z275900.1 Ceric.1Z275900 heavy chain of clathrin triskelion & original... 0.01 OrthoFinder output from all 39 species
Dcu_g02059 No alias heavy chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 39 species
Dcu_g35445 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Dde_g02557 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Dde_g10505 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g09904 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
GSVIVT01024708001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 OrthoFinder output from all 39 species
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 OrthoFinder output from all 39 species
Gb_33028 No alias heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species
LOC_Os11g01380.1 LOC_Os11g01380 heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species
LOC_Os12g01390.1 LOC_Os12g01390 heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species
Len_g11569 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 39 species
Lfl_g03514 No alias heavy chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 39 species
MA_47260g0010 No alias Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 39 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 39 species
Ore_g16662 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Pir_g13635 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 39 species
Pir_g31939 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Pnu_g13808 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Pp3c1_37710V3.1 Pp3c1_37710 Clathrin, heavy chain 0.01 OrthoFinder output from all 39 species
Pp3c2_3220V3.1 Pp3c2_3220 Clathrin, heavy chain 0.01 OrthoFinder output from all 39 species
Ppi_g29284 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Sacu_v1.1_s0005.g002555 No alias heavy chain of clathrin triskelion & original... 0.02 OrthoFinder output from all 39 species
Sam_g11622 No alias heavy chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 39 species
Sam_g36809 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Smo149750 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 OrthoFinder output from all 39 species
Solyc05g052510.4.1 Solyc05g052510 heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species
Solyc06g051310.3.1 Solyc06g051310 heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species
Spa_g09457 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 39 species
Spa_g17793 No alias heavy chain of clathrin triskelion & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g08699 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 39 species
Zm00001e009296_P003 Zm00001e009296 heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species
Zm00001e018002_P001 Zm00001e018002 Clathrin heavy chain 1 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 39 species
Zm00001e020822_P001 Zm00001e020822 heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species
Zm00001e023940_P002 Zm00001e023940 heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species
Zm00001e039167_P001 Zm00001e039167 heavy chain of clathrin triskelion 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 850 975
IPR000547 Clathrin_H-chain/VPS_repeat 701 839
IPR000547 Clathrin_H-chain/VPS_repeat 1292 1431
IPR000547 Clathrin_H-chain/VPS_repeat 1145 1281
IPR000547 Clathrin_H-chain/VPS_repeat 557 692
IPR000547 Clathrin_H-chain/VPS_repeat 993 1133
IPR000547 Clathrin_H-chain/VPS_repeat 1437 1579
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR022365 Clathrin_H-chain_propeller_rpt 20 55
IPR022365 Clathrin_H-chain_propeller_rpt 156 197
No external refs found!