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  5. Spa_g12144

Spa_g12144 (ATPCNA1, PCNA1)


Aliases : ATPCNA1, PCNA1

Description : sliding clamp protein *(PCNA) & original description: none


Gene families : OG0002250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259890 ATPCNA1, PCNA1,... Cell cycle.interphase.DNA... 0.08 OrthoFinder output from all 47 species
AMTR_s00029p00198200 ATPCNA1, PCNA1,... Cell cycle.interphase.DNA... 0.07 OrthoFinder output from all 47 species
AT1G07370 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 0.1 OrthoFinder output from all 47 species
Adi_g020149 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g00737 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05666 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07143 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.15 OrthoFinder output from all 47 species
Als_g50349 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g11632 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene47926.t1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g09705 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.21G042200.1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description:... 0.13 OrthoFinder output from all 47 species
Ceric.27G045300.1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.141 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021319.67 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.07 OrthoFinder output from all 47 species
Cre12.g515850 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.16 OrthoFinder output from all 47 species
Dac_g03057 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.21 OrthoFinder output from all 47 species
GSVIVT01024815001 PCNA2, ATPCNA2 Cell cycle.interphase.DNA... 0.14 OrthoFinder output from all 47 species
Gb_07434 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.04 OrthoFinder output from all 47 species
Gb_11143 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.16 OrthoFinder output from all 47 species
LOC_Os02g56130.1 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.1 OrthoFinder output from all 47 species
Len_g11664 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.12 OrthoFinder output from all 47 species
Len_g11665 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g30418 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.06 OrthoFinder output from all 47 species
MA_83835g0010 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.14 OrthoFinder output from all 47 species
Mp2g02690.1 PCNA2, ATPCNA2 sliding clamp protein (PCNA) 0.02 OrthoFinder output from all 47 species
Msp_g09130 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.16 OrthoFinder output from all 47 species
Nbi_g07886 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c4_11630V3.1 ATPCNA1, PCNA1,... proliferating cellular nuclear antigen 1 0.05 OrthoFinder output from all 47 species
Sam_g26451 No alias sliding clamp protein *(PCNA) & original description: none 0.14 OrthoFinder output from all 47 species
Smo105735 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
Solyc06g076660.3.1 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.12 OrthoFinder output from all 47 species
Spa_g47454 PCNA2, ATPCNA2 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12734 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.21 OrthoFinder output from all 47 species
Zm00001e016159_P001 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.16 OrthoFinder output from all 47 species
Zm00001e023660_P001 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006275 regulation of DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR022648 Pr_cel_nuc_antig_N 1 125
IPR022649 Pr_cel_nuc_antig_C 127 237
No external refs found!