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  5. Spa_g08664

Spa_g08664


Description : not classified & original description: none


Gene families : OG0002612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g08664
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Adi_g024968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G063500.1 Ceric.07G063500 not classified & original description: pacid=50626237... 0.02 OrthoFinder output from all 47 species
Dcu_g02948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01028150001 No alias No description available 0.02 OrthoFinder output from all 47 species
MA_51020g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g09390.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ore_g45165 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g14015 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g14626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g078610.4.1 Solyc08g078610 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e025585_P002 Zm00001e025585 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 127 191
No external refs found!