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  5. Spa_g08466

Spa_g08466


Description : nucleoporin of nuclear pore complex *(NUP50) & original description: none


Gene families : OG0003460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g08466
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Als_g33092 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
Aop_g05959 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Cba_g68744 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Ceric.05G088800.1 Ceric.05G088800 nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01017123001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Gb_36064 No alias NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Len_g15298 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g30506 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Ore_g30460 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g25633 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g15742 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e028119_P001 Zm00001e028119 NUP50 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0046907 intracellular transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 13 76
IPR000156 Ran_bind_dom 379 492
No external refs found!