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Description : not classified & original description: none
Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Spa_g07859 | |
| Cluster | HCCA: Cluster_56 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ala_g32445 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g06006 | OTP82 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g06418 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07408 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30875 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30884 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09161 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0469.g072874 | CRR22 | not classified & original description: CDS=1-1206 | 0.01 | OrthoFinder output from all 47 species | |
| Cba_g05221 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g31170 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g09651 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g05010 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06175 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g07112 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g13947 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g29461 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g03867 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g06936 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g63140 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0007.g003855 | No alias | not classified & original description: CDS=1-1500 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0049.g013724 | No alias | not classified & original description: CDS=1-1671 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0061.g015366 | No alias | not classified & original description: CDS=1-2334 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g51154 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g04449 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g09941 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004637 | phosphoribosylamine-glycine ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006144 | purine nucleobase metabolic process | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0009112 | nucleobase metabolic process | IEP | HCCA |
| BP | GO:0009113 | purine nucleobase biosynthetic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0042393 | histone binding | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 96 | 142 |
| IPR002885 | Pentatricopeptide_repeat | 312 | 357 |
| IPR002885 | Pentatricopeptide_repeat | 197 | 244 |
| IPR002885 | Pentatricopeptide_repeat | 285 | 309 |
| IPR002885 | Pentatricopeptide_repeat | 414 | 438 |
| IPR002885 | Pentatricopeptide_repeat | 449 | 475 |
| IPR046848 | E_motif | 529 | 572 |
| No external refs found! |