Spa_g07302 (TOP6B, BIN3, HYP6,...)

Aliases : TOP6B, BIN3, HYP6, RHL3, ATTOP6B

Description : component *(TOP6B) of somatic DNA topoisomerase VI complex & original description: none

Gene families : OG0006857 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006857_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g07302
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
Adi_g002446	TOP6B, BIN3,...	component *(TOP6B) of somatic DNA topoisomerase VI...	0.03	OrthoFinder output from all 47 species
Als_g05038	TOP6B, BIN3,...	component *(TOP6B) of somatic DNA topoisomerase VI...	0.03	OrthoFinder output from all 47 species
Aob_g06656	TOP6B, BIN3,...	component *(TOP6B) of somatic DNA topoisomerase VI...	0.02	OrthoFinder output from all 47 species
Cba_g01171	TOP6B, BIN3,...	component *(TOP6B) of somatic DNA topoisomerase VI...	0.04	OrthoFinder output from all 47 species
LOC_Os09g10770.1	TOP6B, BIN3,...	DNA topoisomerase 6 subunit B OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
MA_10429058g0010	TOP6B, BIN3,...	DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Tin_g05199	TOP6B, BIN3,...	component *(TOP6B) of somatic DNA topoisomerase VI...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015320	TopoVI_B_transducer	394	552

External Links

No external refs found!

Spa_g07302 (TOP6B, BIN3, HYP6,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation