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  5. Spa_g04832

Spa_g04832


Description : regulatory protein *(UBA1/2) of UBP1 activity & original description: none


Gene families : OG0008736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g04832

Target Alias Description ECC score Gene Family Method Actions
Ala_g02761 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Als_g30682 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Aop_g06478 UBA2A regulatory protein *(UBA1/2) of UBP1 activity & original... 0.05 OrthoFinder output from all 47 species
Ceric.05G072300.1 Ceric.05G072300 regulatory protein *(UBA1/2) of UBP1 activity & original... 0.05 OrthoFinder output from all 47 species
Ceric.21G003400.1 UBA2A, Ceric.21G003400 regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Dac_g07665 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.04 OrthoFinder output from all 47 species
Dac_g11220 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Dac_g29057 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Pir_g08614 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.05 OrthoFinder output from all 47 species
Pir_g15234 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
CC GO:0032299 ribonuclease H2 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 68 134
IPR000504 RRM_dom 172 240
No external refs found!