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  5. Spa_g00478

Spa_g00478 (RAD50, ATRAD50)


Aliases : RAD50, ATRAD50

Description : component *(RAD50) of DNA resection MRE11-RAD50-NBS1 (MRN) complex & original description: none


Gene families : OG0005654 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005654_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g00478

Target Alias Description ECC score Gene Family Method Actions
AT2G31970 RAD50, ATRAD50 DNA repair-recombination protein (RAD50) 0.04 OrthoFinder output from all 47 species
Als_g01975 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.02 OrthoFinder output from all 47 species
Aob_g12355 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Ceric.14G029200.1 RAD50, ATRAD50,... component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.04 OrthoFinder output from all 47 species
Cre03.g192550 RAD50, ATRAD50 DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Dcu_g08986 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.04 OrthoFinder output from all 47 species
Ehy_g20387 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Ppi_g05944 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004289 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.04 OrthoFinder output from all 47 species
Solyc05g053800.3.1 RAD50, ATRAD50,... component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0140664 ATP-dependent DNA damage sensor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013134 Zn_hook_RAD50 683 719
IPR038729 Rad50/SbcC_AAA 7 248
No external refs found!