Ore_g44474 (PUB25)

Aliases : PUB25

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g44474

Target	Alias	Description	ECC score	Gene Family Method
AT3G02840	No alias	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
Aob_g19115	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g04412	PUB23	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene12032.t1	PUB25, Aspi01Gene12032	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15171.t1	PUB29, ATPUB29,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene22942.t1	PUB26, Aspi01Gene22942	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene35689.t1	PUB25, Aspi01Gene35689	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene43214.t1	PUB24, Aspi01Gene43214	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g16814	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.10G007700.1	PUB23, Ceric.10G007700	not classified & original description: pacid=50612519...	0.04	OrthoFinder output from all 47 species
Ceric.19G059800.1	PUB26, Ceric.19G059800	not classified & original description: pacid=50575490...	0.03	OrthoFinder output from all 47 species
Ceric.24G024900.1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description:...	0.04	OrthoFinder output from all 47 species
Dcu_g26825	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_02628	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Msp_g11599	PUB23	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g38744	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g09512	PUB29, ATPUB29	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g11257	PUB26	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g01233	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g03492	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c24_16470V3.1	ATPUB17, PUB17,...	RING/U-box superfamily protein with ARM repeat domain	0.01	OrthoFinder output from all 47 species
Smo92304	PUB13, ATPUB13	U-box domain-containing protein 13 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	99	170

External Links

No external refs found!

Ore_g44474 (PUB25)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation