Ore_g43759 (RAD23B, RAD23)

Aliases : RAD23B, RAD23

Description : ubiquitin-proteasome shuttle factor *(RAD23) & original description: none

Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g43759
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
Adi_g058741	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Adi_g106017	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Aev_g45033	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Aop_g07923	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Aop_g31214	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Cre08.g366400	RAD23B, RAD23	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_20110	RAD23B, RAD23	shuttle protein (RAD23)	0.02	OrthoFinder output from all 47 species
LOC_Os08g33340.1	RAD23D, LOC_Os08g33340	shuttle protein (RAD23)	0.03	OrthoFinder output from all 47 species
Msp_g06770	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g09383	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g35763	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Pp3c10_8490V3.1	RAD23B, RAD23,...	Rad23 UV excision repair protein family	0.02	OrthoFinder output from all 47 species
Ppi_g11616	RAD23-3, RAD23C	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015747	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Sam_g37047	No alias	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Smo77427	RAD23B, RAD23	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Tin_g19292	RAD23B, RAD23	ubiquiTin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e030951_P001	RAD23D, Zm00001e030951	shuttle protein (RAD23)	0.03	OrthoFinder output from all 47 species
Zm00001e036768_P002	RAD23D, Zm00001e036768	shuttle protein (RAD23)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
CC	GO:0000502	proteasome complex	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006874	cellular calcium ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032469	endoplasmic reticulum calcium ion homeostasis	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042176	regulation of protein catabolic process	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
CC	GO:0071203	WASH complex	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	76
IPR015360	XPC-bd	277	326
IPR015940	UBA	162	200

External Links

No external refs found!

Ore_g43759 (RAD23B, RAD23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation