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  5. Ore_g40904

Ore_g40904 (ABCA1, AtABCA1)


Aliases : ABCA1, AtABCA1

Description : subfamily ABCA transporter & original description: none


Gene families : OG0001787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001787_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g40904
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00159p00062660 ABCA1, AtABCA1,... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AT3G47730 ATH1, ATATH1, ABCA2 ATP-binding cassette A2 0.03 OrthoFinder output from all 47 species
Aop_g09766 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G040100.1 ATH1, ATATH1,... subfamily ABCA transporter & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000057.66 ATH1, ATATH1, ABCA2 ABC transporter A family member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01033258001 ABCA1, AtABCA1 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 569 711
IPR003439 ABC_transporter-like_ATP-bd 1479 1621
No external refs found!