Ore_g40488

Description : nucleocytoplasmic import karyopherin *(IMB1) & original description: none

Gene families : OG0001300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001300_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g40488

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00188470	evm_27.TU.AmTr_v1...	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
AT5G53480	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g019484	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.04	OrthoFinder output from all 47 species
Adi_g057720	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Adi_g102316	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Adi_g102317	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Als_g03885	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Als_g32943	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Aob_g02382	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.04	OrthoFinder output from all 47 species
Cre01.g034000	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species
Ehy_g09212	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Gb_36673	No alias	IMB1 nucleocytoplasmic import karyopherin	0.03	OrthoFinder output from all 47 species
Len_g05449	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Lfl_g34606	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Msp_g12557	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Ore_g22836	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.01	OrthoFinder output from all 47 species
Pir_g08379	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Pnu_g08124	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.02	OrthoFinder output from all 47 species
Pnu_g11141	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.04	OrthoFinder output from all 47 species
Smo124593	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species
Smo185511	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
Solyc03g082940.3.1	Solyc03g082940	IMB1 nucleocytoplasmic import karyopherin	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001494	Importin-beta_N	11	90

External Links

No external refs found!

Ore_g40488

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation