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  5. Ore_g38151

Ore_g38151


Description : component *(TRA1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g38151

Target Alias Description ECC score Gene Family Method Actions
AT2G17930 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.03 OrthoFinder output from all 47 species
AT4G36080 No alias phosphotransferases, alcohol group as... 0.04 OrthoFinder output from all 47 species
Adi_g012013 No alias component *(TRA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Ala_g11954 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Als_g20278 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aob_g32646 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aspi01Gene41426.t1 Aspi01Gene41426 component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031225 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Cba_g06599 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.07G020000.1 Ceric.07G020000 component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Cre02.g088750 No alias Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder output from all 47 species
Dcu_g03224 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ehy_g01717 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
GSVIVT01018783001 No alias Protein modification.phosphorylation.atypical kinase... 0.03 OrthoFinder output from all 47 species
LOC_Os07g45064.1 LOC_Os07g45064 component TRA1 of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
LOC_Os07g45070.1 LOC_Os07g45070 component TRA1 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
LOC_Os07g45074.1 LOC_Os07g45074 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g36110 No alias component *(TRA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
MA_10427352g0010 No alias component TRA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
MA_10430300g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_10430300g0020 No alias component TRA1 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
MA_158845g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_3337g0010 No alias protein kinase (PIKK) 0.02 OrthoFinder output from all 47 species
Mp5g23620.1 No alias component TRA1 of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Msp_g31775 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Nbi_g03878 No alias component *(TRA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ppi_g39737 No alias component *(TRA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Sam_g50512 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Solyc02g083780.3.1 Solyc02g083780 protein kinase (PIKK) 0.03 OrthoFinder output from all 47 species
Solyc02g083900.3.1 Solyc02g083900 component TRA1 of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Spa_g25856 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Tin_g32158 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003152 FATC_dom 3867 3898
IPR003151 PIK-rel_kinase_FAT 2810 3152
IPR046805 Tra1_ring 823 2665
IPR046807 Tra1_central 251 811
IPR000403 PI3/4_kinase_cat_dom 3565 3811
No external refs found!