Aliases : PTAC3
Description : cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3) & original description: none
Gene families : OG0004426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004426_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G04260 | PTAC3 | plastid transcriptionally active 3 | 0.07 | OrthoFinder output from all 47 species | |
Ceric.39G010500.1 | PTAC3, Ceric.39G010500 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.07 | OrthoFinder output from all 47 species | |
Cre12.g497350 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g07704 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g09087 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.04 | OrthoFinder output from all 47 species | |
Gb_05601 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
Gb_05602 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os10g32540.1 | PTAC3, LOC_Os10g32540 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g12563 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.07 | OrthoFinder output from all 47 species | |
MA_10433475g0010 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.02 | OrthoFinder output from all 47 species | |
MA_7597000g0010 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
Mp2g04680.1 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.07 | OrthoFinder output from all 47 species | |
Smo164431 | PTAC3 | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.02 | OrthoFinder output from all 47 species | |
Solyc04g050540.4.1 | PTAC3, Solyc04g050540 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e004642_P001 | PTAC3, Zm00001e004642 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006536 | glutamate metabolic process | IEP | HCCA |
BP | GO:0006537 | glutamate biosynthetic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | HCCA |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | HCCA |
MF | GO:0015930 | glutamate synthase activity | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
MF | GO:0019842 | vitamin binding | IEP | HCCA |
MF | GO:0030976 | thiamine pyrophosphate binding | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | HCCA |
BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | HCCA |
MF | GO:0044183 | protein folding chaperone | IEP | HCCA |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0050997 | quaternary ammonium group binding | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0140662 | ATP-dependent protein folding chaperone | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
MF | GO:1901681 | sulfur compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 329 | 389 |
No external refs found! |