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  5. Ore_g34623

Ore_g34623 (FLN1)


Aliases : FLN1

Description : cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1) & original description: none


Gene families : OG0007280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007280_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g34623
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193710 FLN1,... Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00193780 FLN1,... Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ala_g18551 FLN1 cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1)... 0.02 OrthoFinder output from all 47 species
Als_g03718 FLN1 cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1)... 0.02 OrthoFinder output from all 47 species
LOC_Os01g63220.2 FLN1, LOC_Os01g63220 PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Nbi_g04266 FLN1 cofactor of plastid-encoded RNA polymerase *(PAP6/FLN1)... 0.03 OrthoFinder output from all 47 species
Zm00001e019266_P002 FLN1, Zm00001e019266 PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011611 PfkB_dom 114 454
No external refs found!