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  5. Ore_g19204

Ore_g19204


Description : not classified & original description: none


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g19204

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00028940 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Adi_g075380 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Aev_g38233 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Als_g26663 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g14550 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Aob_g16006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g06975 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001175 No alias not classified & original description: CDS=1-2628 0.03 OrthoFinder output from all 47 species
Ceric.29G060800.1 Ceric.29G060800 not classified & original description: pacid=50624742... 0.04 OrthoFinder output from all 47 species
Ceric.29G061100.1 Ceric.29G061100 XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Cre10.g441200 No alias RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder output from all 47 species
Dcu_g05816 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g19294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19632 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g07929 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01006333001 No alias La-related protein 1C OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01029892001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g02117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_175718g0010 No alias XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species
MA_1763g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Msp_g15347 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Msp_g26140 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10955 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g11613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g081820.3.1 Solyc04g081820 La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 313 368
No external refs found!