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  5. Ore_g19192

Ore_g19192 (GTA02, GTA2)


Aliases : GTA02, GTA2

Description : component *(SPT5) of SPT4/5 transcription elongation factor complex & original description: none


Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g19192
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00250180 GTA02, GTA2,... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
AT5G04290 SPT5L, KTF1 kow domain-containing transcription factor 1 0.02 OrthoFinder output from all 47 species
Adi_g020093 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.07 OrthoFinder output from all 47 species
Adi_g122061 GTA02, GTA2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05130 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Aob_g14168 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aop_g07106 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.06 OrthoFinder output from all 47 species
Azfi_s0078.g038202 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Cba_g04715 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Ceric.26G072300.1 GTA02, GTA2,... component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Dcu_g08962 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Dde_g07477 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Ehy_g18831 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
GSVIVT01010022001 GTA02, GTA2 RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Gb_37075 GTA02, GTA2 RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.04 OrthoFinder output from all 47 species
LOC_Os05g43060.1 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.04 OrthoFinder output from all 47 species
Len_g12137 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.05 OrthoFinder output from all 47 species
Lfl_g05703 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
MA_10434986g0010 GTA02, GTA2 RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.07 OrthoFinder output from all 47 species
Pir_g38711 GTA02, GTA2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52300 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Sam_g37710 No alias component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Smo449156 GTA02, GTA2 RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Smo96727 GTA02, GTA2 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Solyc04g064700.4.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.02 OrthoFinder output from all 47 species
Spa_g04271 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Tin_g41245 GTA02, GTA2 component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e027389_P004 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.04 OrthoFinder output from all 47 species
Zm00001e030789_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species
Zm00001e036210_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005100 NGN-domain 176 261
IPR022581 Spt5_N 81 170
IPR005824 KOW 603 625
IPR005824 KOW 273 303
IPR005824 KOW 477 503
No external refs found!