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  5. Ore_g15334

Ore_g15334


Description : component *(SYF2) of MAC spliceosome-associated complex & original description: none


Gene families : OG0003956 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003956_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g15334

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene20166.t1 Aspi01Gene20166 component *(SYF2) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020693.8 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Ehy_g09766 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Mp4g10260.1 No alias component SYF2 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Pnu_g07421 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008774 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR013260 mRNA_splic_SYF2 159 306
No external refs found!