Ore_g10343

Description : component *(uS3c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g10343
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
ATCG00800	No alias	structural constituent of ribosome	0.13	OrthoFinder output from all 47 species
Aev_g14422	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Aob_g23172	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cba_g05105	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.05G042400.1	Ceric.05G042400	component *(uS3c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.05G052300.1	Ceric.05G052300	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.07G056500.1	Ceric.07G056500	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.1Z164000.1	Ceric.1Z164000	not classified & original description: pacid=50596956...	0.03	OrthoFinder output from all 47 species
Ceric.29G004400.1	Ceric.29G004400	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.29G068400.1	Ceric.29G068400	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.38G009200.1	Ceric.38G009200	component *(uS3c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dcu_g13090	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
LOC_Os04g16824.1	LOC_Os04g16824	component psRPS3 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os09g24416.1	LOC_Os09g24416	component psRPS3 of small ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Lfl_g28864	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Pir_g00314	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028730	No alias	not classified & original description: CDS=1-393	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028813	No alias	component *(uS3c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Solyc00g500034.1.1	Solyc00g500034	component psRPL22 of large ribosomal subunit proteome....	0.06	OrthoFinder output from all 47 species
Solyc09g050066.1.1	Solyc09g050066	30S ribosomal protein S3, chloroplastic OS=Solanum...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	162	244

External Links

No external refs found!

Ore_g10343

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation