Aliases : RPL4
Description : component *(uL4c) of large plastid ribosomal-subunit proteome & original description: none
Gene families : OG0007896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007896_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Ore_g08496 | |
Cluster | HCCA: Cluster_127 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00029p00221060 | RPL4,... | Protein biosynthesis.organelle translation... | 0.07 | OrthoFinder output from all 47 species | |
AT1G07320 | RPL4 | ribosomal protein L4 | 0.08 | OrthoFinder output from all 47 species | |
Ala_g05983 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.08 | OrthoFinder output from all 47 species | |
Als_g20889 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Aob_g13415 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.1 | OrthoFinder output from all 47 species | |
Aop_g05120 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Aspi01Gene15325.t1 | RPL4, Aspi01Gene15325 | component *(uL4c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0056.g034220 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Cba_g34049 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.09G057300.1 | RPL4, Ceric.09G057300 | component *(uL4c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Cre11.g479500 | RPL4 | Protein biosynthesis.organelle translation... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g21787 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g06106 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.08 | OrthoFinder output from all 47 species | |
Dde_g06392 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Ehy_g02216 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.11 | OrthoFinder output from all 47 species | |
GSVIVT01024788001 | RPL4 | 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum | 0.06 | OrthoFinder output from all 47 species | |
Gb_03469 | RPL4 | component psRPL4 of large ribosomal subunit proteome | 0.09 | OrthoFinder output from all 47 species | |
LOC_Os03g15870.1 | RPL4, LOC_Os03g15870 | component psRPL4 of large ribosomal subunit proteome | 0.07 | OrthoFinder output from all 47 species | |
Len_g13257 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.09 | OrthoFinder output from all 47 species | |
Lfl_g01030 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
MA_2315568g0010 | RPL4 | 50S ribosomal protein L4, chloroplastic OS=Nicotiana... | 0.06 | OrthoFinder output from all 47 species | |
Mp1g18940.1 | RPL4 | component psRPL4 of large ribosomal subunit proteome | 0.09 | OrthoFinder output from all 47 species | |
Msp_g19825 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g14226 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g19924 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Pnu_g10727 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g15929 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0219.g026142 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Solyc07g061900.3.1 | RPL4, Solyc07g061900 | component psRPL4 of large ribosomal subunit proteome | 0.06 | OrthoFinder output from all 47 species | |
Spa_g08728 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g24110 | RPL4 | component *(uL4c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e001165_P001 | RPL4, Zm00001e001165 | component psRPL4 of large ribosomal subunit proteome | 0.08 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005509 | calcium ion binding | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | HCCA |
BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
MF | GO:0071949 | FAD binding | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002136 | Ribosomal_L4/L1e | 62 | 250 |
No external refs found! |