Ore_g05671 (emb2394)

Aliases : emb2394

Description : component *(uL6c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0003589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003589_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g05671

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00057610	emb2394,...	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
AT1G05190	emb2394	Ribosomal protein L6 family	0.08	OrthoFinder output from all 47 species
Adi_g085705	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aev_g41502	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ala_g09001	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Als_g21971	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g01557	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aspi01Gene04335.t1	emb2394, Aspi01Gene04335	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aspi01Gene04336.t1	emb2394, Aspi01Gene04336	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0387.g067570	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0454.g071297	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g20392	emb2394	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g66463	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.25G034500.1	emb2394, Ceric.25G034500	component *(uL6c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Cre09.g415950	emb2394	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Dcu_g12981	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ehy_g05438	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01030599001	emb2394	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Gb_27916	emb2394	component psRPL6 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
LOC_Os03g24020.1	emb2394, LOC_Os03g24020	component psRPL6 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
LOC_Os03g54040.1	emb2394, LOC_Os03g54040	component psRPL6 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Len_g08412	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Lfl_g00829	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
MA_54628g0010	emb2394	component psRPL6 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Mp1g03630.1	emb2394	component psRPL6 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Msp_g08305	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Nbi_g02779	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g14367	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g55752	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pnu_g10916	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ppi_g31709	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011918	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g15102	No alias	component *(uL6c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Solyc12g100160.3.1	emb2394, Solyc12g100160	component psRPL6 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Spa_g11042	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Tin_g06396	emb2394	component *(uL6c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Zm00001e001699_P002	emb2394, Zm00001e001699	component psRPL6 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Zm00001e038182_P002	emb2394, Zm00001e038182	component psRPL6 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0047746	chlorophyllase activity	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	133	207
IPR020040	Ribosomal_L6_a/b-dom	53	125

External Links

No external refs found!

Ore_g05671 (emb2394)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation