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  5. Aev_g14422

Aev_g14422


Description : component *(uS3c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g14422
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
ATCG00800 No alias structural constituent of ribosome 0.33 OrthoFinder output from all 47 species
Als_g09230 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Cba_g05105 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ceric.05G042400.1 Ceric.05G042400 component *(uS3c) of small plastid ribosomal-subunit... 0.26 OrthoFinder output from all 47 species
Ceric.05G052300.1 Ceric.05G052300 component *(uS3c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.07G056500.1 Ceric.07G056500 component *(uS3c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ceric.1Z164000.1 Ceric.1Z164000 not classified & original description: pacid=50596956... 0.14 OrthoFinder output from all 47 species
Ceric.29G004400.1 Ceric.29G004400 component *(uS3c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.29G068400.1 Ceric.29G068400 component *(uS3c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.38G009200.1 Ceric.38G009200 component *(uS3c) of small plastid ribosomal-subunit... 0.26 OrthoFinder output from all 47 species
Dcu_g13090 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Gb_15033 No alias component psRPS3 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
LOC_Os04g16824.1 LOC_Os04g16824 component psRPS3 of small ribosomal subunit proteome 0.22 OrthoFinder output from all 47 species
LOC_Os09g24416.1 LOC_Os09g24416 component psRPS3 of small ribosomal subunit proteome 0.23 OrthoFinder output from all 47 species
Lfl_g28864 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.21 OrthoFinder output from all 47 species
Msp_g15785 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ore_g10343 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Pir_g00314 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028730 No alias not classified & original description: CDS=1-393 0.14 OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028813 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.16 OrthoFinder output from all 47 species
Sam_g05008 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc00g500034.1.1 Solyc00g500034 component psRPL22 of large ribosomal subunit proteome.... 0.06 OrthoFinder output from all 47 species
Solyc09g050066.1.1 Solyc09g050066 30S ribosomal protein S3, chloroplastic OS=Solanum... 0.02 OrthoFinder output from all 47 species
Zm00001e003906_P001 Zm00001e003906 component psRPS3 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Zm00001e009620_P001 Zm00001e009620 component psRPS3 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Zm00001e011301_P001 Zm00001e011301 component psRPS3 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e042063_P001 Zm00001e042063 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042087_P001 Zm00001e042087 component psRPS3 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e042094_P001 Zm00001e042094 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042371_P001 Zm00001e042371 component psRPS3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e042375_P001 Zm00001e042375 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042402_P001 Zm00001e042402 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042447_P001 Zm00001e042447 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 131 213
No external refs found!