Aliases : APUM12, PUM12
Description : not classified & original description: none
Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00060p00178160 | PUM7, APUM7,... | Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0040.g026500 | APUM12, PUM12 | not classified & original description: CDS=1-2874 | 0.02 | OrthoFinder output from all 47 species | |
Ceric.39G043300.1 | PUM7, APUM7,... | not classified & original description: pacid=50583488... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01009386001 | APUM12, PUM12 | Pumilio homolog 12 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
MA_63194g0010 | APUM12, PUM12 | Pumilio homolog 12 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
MA_6394g0010 | APUM12, PUM12 | Pumilio homolog 12 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g05874 | PUM7, APUM7 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g32248 | APUM12, PUM12 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g63452 | PUM7, APUM7 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0046872 | metal ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006400 | tRNA modification | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006810 | transport | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001313 | Pumilio_RNA-bd_rpt | 884 | 917 |
IPR001313 | Pumilio_RNA-bd_rpt | 776 | 806 |
IPR001313 | Pumilio_RNA-bd_rpt | 700 | 731 |
IPR001313 | Pumilio_RNA-bd_rpt | 849 | 866 |
IPR001313 | Pumilio_RNA-bd_rpt | 925 | 943 |
IPR001313 | Pumilio_RNA-bd_rpt | 664 | 698 |
IPR001313 | Pumilio_RNA-bd_rpt | 738 | 770 |
IPR001313 | Pumilio_RNA-bd_rpt | 811 | 844 |
IPR000571 | Znf_CCCH | 512 | 533 |
No external refs found! |