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  5. Ppi_g56937

Ppi_g56937 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : not classified & original description: none


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g56937
Cluster HCCA: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
Adi_g106797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19873 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g72184 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Ceric.17G046000.1 ATCAF1, CAF1,... not classified & original description: pacid=50617225... 0.03 OrthoFinder output from all 47 species
Dac_g10639 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g42601 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.05 OrthoFinder output from all 47 species
Ore_g02160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03045 ATCAF1, CAF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g018240.4.1 ATCAF1, CAF1,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.02 OrthoFinder output from all 47 species
Solyc11g066300.3.1 CAF2, ATCAF2,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 OrthoFinder output from all 47 species
Spa_g51985 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Tin_g12704 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 759 842
No external refs found!