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  5. Ppi_g56829

Ppi_g56829


Description : not classified & original description: none


Gene families : OG0000954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000954_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g56829
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00208300 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Adi_g060541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05168 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07954 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21623 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.29G059500.1 Ceric.29G059500 N-methyltransferase component *(ATX3/4/5) of COMPASS... 0.03 OrthoFinder output from all 47 species
Dcu_g06515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016344001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01031118001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01032455001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_40891 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10197194g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10434021g0020 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Nbi_g02506 No alias EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Nbi_g13020 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g06983 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41391 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g40244 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e027258_P002 Zm00001e027258 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 1083 1166
No external refs found!