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  5. Ppi_g54393

Ppi_g54393


Description : not classified & original description: none


Gene families : OG0000618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g54393

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0006.g010151 No alias not classified & original description: CDS=380-691 0.03 OrthoFinder output from all 47 species
Ehy_g13565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g62060.1 LOC_Os01g62060 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g25746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g005230.3.1 Solyc05g005230 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006476 CHP01589_pln 26 77
No external refs found!