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  5. Ppi_g48732

Ppi_g48732 (RecQl3, ATRECQ3)


Aliases : RecQl3, ATRECQ3

Description : not classified & original description: none


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g48732

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00224070 MED34, ATRECQ2,... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Aev_g20239 RECQI1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14650 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.03 OrthoFinder output from all 47 species
Azfi_s0503.g073906 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.04G073400.1 MED34, ATRECQ2,... component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.34G005600.1 RECQI1, Ceric.34G005600 not classified & original description: pacid=50623064... 0.03 OrthoFinder output from all 47 species
Dac_g16350 RecQl3, ATRECQ3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06356 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Dde_g43590 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Ehy_g13229 ATRECQ4A, ATSGS1, RECQ4A helicase component *(RecQ4A) of RTR Holliday junction... 0.02 OrthoFinder output from all 47 species
Gb_33079 ATRECQ4A, ATSGS1, RECQ4A helicase component RecQ4A of RTR Holliday junction... 0.02 OrthoFinder output from all 47 species
LOC_Os11g48090.5 MED34, ATRECQ2,... component MED34 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Lfl_g31337 RECQI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36631 RecQl3, ATRECQ3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_387725g0010 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g41299 RECQI1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016051_P001 RecQl3, ATRECQ3,... ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 44 209
IPR001650 Helicase_C 249 353
IPR032284 RecQ_Zn-bd 367 438
No external refs found!