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  5. Ppi_g45359

Ppi_g45359


Description : CORVET-specific component *(VPS8) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0004817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004817_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g45359

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00114870 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Als_g32080 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Aob_g31629 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Aop_g27461 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Ehy_g19649 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Gb_27586 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Len_g19136 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Lfl_g29102 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Zm00001e013515_P001 Zm00001e013515 CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR025941 Vps8_central_dom 1060 1246
IPR000547 Clathrin_H-chain/VPS_repeat 1562 1630
No external refs found!