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  5. Ppi_g32744

Ppi_g32744


Description : plant-specific stabilizing component *(ClpT) of chloroplast Clp-type protease complex & original description: none


Gene families : OG0007488 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007488_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g32744

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00213590 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
AT4G12060 No alias Double Clp-N motif protein 0.04 OrthoFinder output from all 47 species
AT4G25370 No alias Double Clp-N motif protein 0.02 OrthoFinder output from all 47 species
Ala_g22471 No alias plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
Azfi_s0072.g037001 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Dde_g16574 No alias plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
Ehy_g03326 No alias plant-specific stabilizing component *(ClpT) of... 0.02 OrthoFinder output from all 47 species
LOC_Os03g14280.1 LOC_Os03g14280 plant-specific stabilizing component ClpT of chloroplast... 0.02 OrthoFinder output from all 47 species
Len_g10201 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
MA_12551g0010 No alias plant-specific stabilizing component ClpT of chloroplast... 0.02 OrthoFinder output from all 47 species
MA_377212g0010 No alias plant-specific stabilizing component ClpT of chloroplast... 0.02 OrthoFinder output from all 47 species
Mp6g19150.1 No alias plant-specific stabilizing component ClpT of chloroplast... 0.09 OrthoFinder output from all 47 species
Solyc08g079660.3.1 Solyc08g079660 plant-specific stabilizing component ClpT of chloroplast... 0.03 OrthoFinder output from all 47 species
Tin_g10438 No alias plant-specific stabilizing component *(ClpT) of... 0.04 OrthoFinder output from all 47 species
Zm00001e001033_P002 Zm00001e001033 plant-specific stabilizing component ClpT of chloroplast... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 118 170
IPR004176 Clp_R_dom 205 241
No external refs found!