Ppi_g32052 (STA1, EMB2770)

Aliases : STA1, EMB2770

Description : component *(PRPF6) of U5 snRNP complex & original description: none

Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g32052

Target	Alias	Description	ECC score	Gene Family Method
Ceric.1Z128700.1	STA1, EMB2770,...	component *(PRPF6) of U5 snRNP complex & original...	0.05	OrthoFinder output from all 47 species
Cre14.g633650	STA1, EMB2770	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
Dcu_g14994	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01030385001	STA1, EMB2770	Protein STABILIZED1 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
LOC_Os10g35550.1	STA1, EMB2770,...	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.02	OrthoFinder output from all 47 species
Len_g00746	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.04	OrthoFinder output from all 47 species
Mp6g10790.1	STA1, EMB2770	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.02	OrthoFinder output from all 47 species
Nbi_g11692	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.07	OrthoFinder output from all 47 species
Ore_g19399	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Spa_g01165	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.04	OrthoFinder output from all 47 species
Tin_g02882	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0045927	positive regulation of growth	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	74
IPR010491	PRP1_N	97	265

External Links

No external refs found!