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  5. Ppi_g29617

Ppi_g29617


Description : not classified & original description: none


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g29617
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00123610 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G18950 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g023030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05740.t1 Aspi01Gene05740 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene05743.t1 Aspi01Gene05743 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05748.t1 Aspi01Gene05748 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene38685.t1 Aspi01Gene38685 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44873.t1 Aspi01Gene44873 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45302.t1 Aspi01Gene45302 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45306.t1 Aspi01Gene45306 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60159.t1 Aspi01Gene60159 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g09340 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G066900.1 Ceric.05G066900 not classified & original description: pacid=50578771... 0.03 OrthoFinder output from all 47 species
Ceric.12G075900.1 Ceric.12G075900 not classified & original description: pacid=50601390... 0.03 OrthoFinder output from all 47 species
Dcu_g19296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031882001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_19215 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_27340 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g16677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015595 No alias not classified & original description: CDS=1-1779 0.03 OrthoFinder output from all 47 species
Solyc01g109120.3.1 Solyc01g109120 Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc03g111780.1.1 Solyc03g111780 Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Tin_g13772 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007790_P001 Zm00001e007790 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e015781_P001 Zm00001e015781 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 390 423
IPR001680 WD40_repeat 340 375
No external refs found!