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  5. Ppi_g29275

Ppi_g29275


Description : CMF transcription factor & original description: none


Gene families : OG0001446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g29275
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
Adi_g059244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078688 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10117 No alias CMF transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Als_g05064 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19257 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07077 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48750 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007667 No alias CMF transcription factor & original description: CDS=375-2021 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 420 462
No external refs found!