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  5. Ppi_g18752

Ppi_g18752


Description : RsmD-type rRNA methyltransferase & original description: none


Gene families : OG0005430 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g18752
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00240660 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT3G28460 No alias methyltransferases 0.02 OrthoFinder output from all 47 species
Azfi_s0107.g045098 No alias RsmD-type rRNA methyltransferase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.26G002400.1 Ceric.26G002400 RsmD-type rRNA methyltransferase & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g14054 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29421 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12196 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g52640.2 LOC_Os03g52640 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g11092 No alias RsmD-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01027 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
MA_892340g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pnu_g10244 No alias RsmD-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19713 No alias RsmD-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!