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  5. Ppi_g16275

Ppi_g16275 (SAR1, ATNUP160, NUP160)


Aliases : SAR1, ATNUP160, NUP160

Description : scaffold nucleoporin of nuclear pore complex *(NUP160) & original description: none


Gene families : OG0004742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004742_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g16275

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00138020 SAR1, ATNUP160,... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
AT1G33410 SAR1, ATNUP160, NUP160 SUPPRESSOR OF AUXIN RESISTANCE1 0.04 OrthoFinder output from all 47 species
Ala_g07840 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Ceric.32G022400.1 SAR1, ATNUP160,... scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.08 OrthoFinder output from all 47 species
Cre07.g324000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g09122 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Ehy_g04055 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01015912001 SAR1, ATNUP160, NUP160 Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Gb_36285 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Gb_36286 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g04970.1 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Lfl_g11272 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
MA_10430989g0010 SAR1, ATNUP160, NUP160 Nuclear pore complex protein NUP160 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10436566g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_33415g0010 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Mp8g11350.1 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Msp_g14433 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Ore_g16665 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
Smo445056 SAR1, ATNUP160, NUP160 Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Solyc01g102540.3.1 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Solyc01g102550.4.1 SAR1, ATNUP160,... Nuclear pore complex protein NUP160 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g07635 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Tin_g09156 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Zm00001e013640_P002 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR035192 NUP160 520 714
No external refs found!