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  5. Ppi_g13186

Ppi_g13186 (SHM4)


Aliases : SHM4

Description : EC_2.1 transferase transferring one-carbon group & original description: none


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g13186
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Aev_g10440 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cre06.g293950 SHM4 Amino acid metabolism.biosynthesis.serine... 0.01 OrthoFinder output from all 47 species
Dcu_g23927 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
GSVIVT01009226001 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species
LOC_Os11g26860.1 SHM4, LOC_Os11g26860 Serine hydroxymethyltransferase 4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Nbi_g04285 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ore_g03183 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Pp3c15_6270V3.1 SHM4, Pp3c15_6270 serine hydroxymethyltransferase 4 0.01 OrthoFinder output from all 47 species
Sam_g07760 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Smo166496 SHM4 Amino acid metabolism.biosynthesis.serine... 0.02 OrthoFinder output from all 47 species
Spa_g08792 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Zm00001e021483_P001 SHM4, Zm00001e021483 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 14 412
No external refs found!