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  5. Ppi_g11614

Ppi_g11614


Description : component *(USP39) of U4/U6.U5 tri-snRNP complex & original description: none


Gene families : OG0005722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005722_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g11614

Target Alias Description ECC score Gene Family Method Actions
Adi_g105601 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Ala_g04780 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Aop_g09374 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021314.13 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Ehy_g01410 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
MA_10428571g0010 No alias protein factor (USP39) of U4/U6 U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Mp1g24510.1 No alias protein factor (USP39) of U4/U6 U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Ore_g16909 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Tin_g03365 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001607 Znf_UBP 108 169
IPR001394 Peptidase_C19_UCH 209 530
No external refs found!