Ppi_g08484


Description : not classified & original description: none


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g08484

Target Alias Description ECC score Gene Family Method Actions
Adi_g001198 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08216 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.02 OrthoFinder output from all 47 species
Ala_g16047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20272 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20441 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32072 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g10962 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25981.t1 Aspi01Gene25981 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25983.t1 Aspi01Gene25983 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010269 No alias not classified & original description: CDS=1215-6422 0.02 OrthoFinder output from all 47 species
Azfi_s0519.g075228 No alias not classified & original description: CDS=211-3699 0.04 OrthoFinder output from all 47 species
Cba_g31776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G075300.1 Ceric.04G075300 not classified & original description: pacid=50631416... 0.04 OrthoFinder output from all 47 species
Cre08.g386000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10038 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 OrthoFinder output from all 47 species
Gb_10088 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.02 OrthoFinder output from all 47 species
LOC_Os04g59510.1 LOC_Os04g59510 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Len_g41870 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_139275g0010 No alias PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.05 OrthoFinder output from all 47 species
MA_22311g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Pir_g01695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g33716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004313 No alias not classified & original description: CDS=588-5219 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026694 No alias not classified & original description: CDS=519-4760 0.03 OrthoFinder output from all 47 species
Sam_g16192 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g071550.3.1 Solyc03g071550 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc06g082040.2.1 Solyc06g082040 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g076010.3.1 Solyc09g076010 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Spa_g50990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g27963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e012046_P003 Zm00001e012046 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 723 774
IPR019787 Znf_PHD-finger 794 835
IPR008395 Agenet-like_dom 18 102
No external refs found!