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  5. Ppi_g07647

Ppi_g07647


Description : component *(eS10) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001341 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001341_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g07647
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00221160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT4G25740 No alias RNA binding Plectin/S10 domain-containing protein 0.03 OrthoFinder output from all 47 species
AT5G52650 No alias RNA binding Plectin/S10 domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g075195 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g125689 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g38517 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g68055 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.11G066500.1 Ceric.11G066500 component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.23G017600.1 Ceric.23G017600 component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001164.5 No alias 40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Cre09.g411100 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Dcu_g34048 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g50620 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Gb_10517 No alias component RPS10 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os01g73160.1 LOC_Os01g73160 component RPS10 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os04g35090.1 LOC_Os04g35090 component RPS10 of SSU proteome 0.02 OrthoFinder output from all 47 species
Lfl_g30568 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_111018g0010 No alias component RPS10 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp2g00580.1 No alias component RPS10 of SSU proteome 0.03 OrthoFinder output from all 47 species
Pp3c14_1810V3.1 Pp3c14_1810 RNA binding Plectin/S10 domain-containing protein 0.01 OrthoFinder output from all 47 species
Pp3c23_13100V3.1 Pp3c23_13100 RNA binding Plectin/S10 domain-containing protein 0.02 OrthoFinder output from all 47 species
Pp3c24_2340V3.1 Pp3c24_2340 RNA binding Plectin/S10 domain-containing protein 0.02 OrthoFinder output from all 47 species
Sam_g14221 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g30478 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g42638 No alias lysine-rich arabinogalactan protein & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46529 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc01g099670.3.1 Solyc01g099670 component RPS10 of SSU proteome 0.02 OrthoFinder output from all 47 species
Spa_g13745 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g43220 No alias component *(eS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e008107_P001 Zm00001e008107 component RPS10 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e028280_P001 Zm00001e028280 component RPS10 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005326 S10_plectin_N 3 94
No external refs found!