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  5. Aev_g08657

Aev_g08657 (THO2, AtTHO2)


Aliases : THO2, AtTHO2

Description : component *(THOC2/Tho2) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0003635 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003635_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g08657
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00044110 THO2, AtTHO2,... RNA processing.messenger ribonucleoprotein particle... 0.07 OrthoFinder output from all 47 species
AT1G24706 THO2, AtTHO2 THO2 0.09 OrthoFinder output from all 47 species
Adi_g107430 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.06 OrthoFinder output from all 47 species
Ala_g38322 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.07 OrthoFinder output from all 47 species
Als_g01214 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Aob_g29810 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Aspi01Gene09828.t1 THO2, AtTHO2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0362.g066911 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Ceric.19G073400.1 THO2, AtTHO2,... component *(THOC2/Tho2) of mRNP trafficking THO... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001428.15 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Cre12.g507700 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Dac_g15531 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Dcu_g02056 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.07 OrthoFinder output from all 47 species
Dde_g04015 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
GSVIVT01011619001 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.08 OrthoFinder output from all 47 species
Gb_33812 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.07 OrthoFinder output from all 47 species
LOC_Os01g68810.1 THO2, AtTHO2,... component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.05 OrthoFinder output from all 47 species
Len_g01408 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Lfl_g04297 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.08 OrthoFinder output from all 47 species
MA_10430572g0010 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.06 OrthoFinder output from all 47 species
MA_10431208g0010 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.02 OrthoFinder output from all 47 species
Mp1g20320.1 THO2, AtTHO2 component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.06 OrthoFinder output from all 47 species
Msp_g02102 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Nbi_g01515 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Ore_g16129 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.07 OrthoFinder output from all 47 species
Pir_g17399 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020047 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.06 OrthoFinder output from all 47 species
Sam_g51475 No alias component *(THOC2/Tho2) of mRNP trafficking THO... 0.05 OrthoFinder output from all 47 species
Smo173562 THO2, AtTHO2 RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Solyc05g017890.4.1 THO2, AtTHO2,... component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.07 OrthoFinder output from all 47 species
Spa_g18725 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Tin_g08678 THO2, AtTHO2 component *(THOC2/Tho2) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021418 THO_THOC2_C 929 1223
IPR032302 THOC2_N 12 410
IPR032302 THOC2_N 448 598
IPR021726 THO_THOC2_N 600 675
No external refs found!