Ppi_g06956 (GRF5, AtGRF5)


Aliases : GRF5, AtGRF5

Description : component *(GRF) of GRF-GIF transcriptional complex & original description: none


Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g06956
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257830 GRF2, AtGRF2,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 OrthoFinder output from all 47 species
AMTR_s00040p00189460 GRF4, AtGRF4,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 OrthoFinder output from all 47 species
AMTR_s00065p00092420 GRF1, AtGRF1,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 OrthoFinder output from all 47 species
AT2G06200 GRF6, AtGRF6 growth-regulating factor 6 0.03 OrthoFinder output from all 47 species
AT2G22840 GRF1, AtGRF1 growth-regulating factor 1 0.02 OrthoFinder output from all 47 species
AT2G36400 GRF3, AtGRF3 growth-regulating factor 3 0.02 OrthoFinder output from all 47 species
AT3G52910 GRF4, AtGRF4 growth-regulating factor 4 0.03 OrthoFinder output from all 47 species
AT4G24150 AtGRF8, GRF8 growth-regulating factor 8 0.04 OrthoFinder output from all 47 species
AT5G53660 AtGRF7, GRF7 growth-regulating factor 7 0.03 OrthoFinder output from all 47 species
Adi_g014148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04374 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Ala_g26167 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Als_g10136 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.06 OrthoFinder output from all 47 species
Als_g13520 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.07 OrthoFinder output from all 47 species
Als_g16124 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Aob_g27286 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35340.t1 GRF1, AtGRF1,... component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene47276.t1 GRF1, AtGRF1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene68335.t1 GRF1, AtGRF1,... component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene70735.t1 GRF5, AtGRF5,... component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene72796.t2 GRF2, AtGRF2,... component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene72796.t3 GRF2, AtGRF2,... component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000094 GRF1, AtGRF1 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0097.g043820 GRF1, AtGRF1 component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Azfi_s0256.g060519 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Cba_g05462 GRF2, AtGRF2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09120 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Cba_g12857 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Ceric.15G044200.1 GRF3, AtGRF3,... component *(GRF) of GRF-GIF transcriptional complex &... 0.06 OrthoFinder output from all 47 species
Ceric.15G046200.1 GRF1, AtGRF1,... component *(GRF) of GRF-GIF transcriptional complex &... 0.06 OrthoFinder output from all 47 species
Ceric.19G047800.1 GRF2, AtGRF2,... component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Ceric.37G026200.1 GRF2, AtGRF2,... not classified & original description: pacid=50616854... 0.04 OrthoFinder output from all 47 species
Dac_g14130 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Dac_g23460 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g14903 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g16923 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g19232 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Dde_g38973 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
GSVIVT01009299001 GRF1, AtGRF1 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 OrthoFinder output from all 47 species
LOC_Os03g47140.1 GRF1, AtGRF1,... component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species
LOC_Os12g29980.1 GRF2, AtGRF2,... component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species
Len_g10947 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Len_g36239 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.08 OrthoFinder output from all 47 species
MA_111469g0010 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species
MA_137877g0010 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species
MA_33661g0010 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.05 OrthoFinder output from all 47 species
MA_88101g0010 GRF1, AtGRF1 component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Msp_g37728 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Msp_g44210 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Nbi_g07300 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Ore_g06951 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002301 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011385 GRF1, AtGRF1 component *(GRF) of GRF-GIF transcriptional complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019225 No alias not classified & original description: CDS=695-3535 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0120.g021398 GRF4, AtGRF4 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023900 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Smo412762 GRF2, AtGRF2 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 OrthoFinder output from all 47 species
Smo420739 GRF2, AtGRF2 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 OrthoFinder output from all 47 species
Smo442384 GRF5, AtGRF5 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.05 OrthoFinder output from all 47 species
Solyc01g091540.3.1 GRF9, AtGRF9,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Solyc08g005430.3.1 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Solyc10g083510.2.1 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Solyc12g096070.2.1 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species
Spa_g17990 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Spa_g33786 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.04 OrthoFinder output from all 47 species
Spa_g48274 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.03 OrthoFinder output from all 47 species
Tin_g11764 GRF5, AtGRF5 component *(GRF) of GRF-GIF transcriptional complex &... 0.06 OrthoFinder output from all 47 species
Tin_g32090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45753 GRF2, AtGRF2 component *(GRF) of GRF-GIF transcriptional complex &... 0.05 OrthoFinder output from all 47 species
Zm00001e012104_P002 GRF1, AtGRF1,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Zm00001e015436_P001 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species
Zm00001e016029_P002 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species
Zm00001e023229_P001 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species
Zm00001e029851_P005 GRF3, AtGRF3,... component GRF of GRF-GIF transcriptional complex 0.04 OrthoFinder output from all 47 species
Zm00001e030774_P001 GRF5, AtGRF5,... component GRF of GRF-GIF transcriptional complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR014978 Gln-Leu-Gln_QLQ 215 249
IPR014977 WRC_dom 280 320
No external refs found!