- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : rhamnosyltransferase *(RRT) & original description: none
Gene families : OG0001379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001379_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Ppi_g05889 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g004517 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g055043 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g05609 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g07066 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g15521 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g24342 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g07312 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0349.g066482 | No alias | rhamnosyltransferase *(RRT) & original description: CDS=495-2240 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G018300.1 | Ceric.04G018300 | rhamnosyltransferase *(RRT) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g06844 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g21090.1 | LOC_Os03g21090 | rhamnosyltransferase | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g17390.1 | LOC_Os06g17390 | rhamnosyltransferase | 0.04 | OrthoFinder output from all 47 species | |
| Len_g11916 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g09258 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_88334g0020 | No alias | no description available(sp|q93zr8|rrt2_arath : 464.0) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g11373 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19024 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g30483 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g11742 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g16164 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g02274 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0038.g012046 | No alias | rhamnosyltransferase *(RRT) & original description: CDS=1-1746 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g16775 | No alias | rhamnosyltransferase *(RRT) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo110454 | No alias | O-fucosyltransferase 21 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g114730.3.1 | Solyc03g114730 | rhamnosyltransferase | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e030982_P001 | Zm00001e030982 | rhamnosyltransferase | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | HCCA |
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
| MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006265 | DNA topological change | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0007017 | microtubule-based process | IEP | HCCA |
| BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
| MF | GO:0008017 | microtubule binding | IEP | HCCA |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0015631 | tubulin binding | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016436 | rRNA (uridine) methyltransferase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0031167 | rRNA methylation | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| MF | GO:0070042 | rRNA (uridine-N3-)-methyltransferase activity | IEP | HCCA |
| BP | GO:0070475 | rRNA base methylation | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR019378 | GDP-Fuc_O-FucTrfase | 143 | 463 |
| No external refs found! |