Ppi_g04632 (VPS35B)

Aliases : VPS35B

Description : component *(VPS35) of Retromer protein recycling complex & original description: none

Gene families : OG0003496 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003496_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g04632

Target	Alias	Description	ECC score	Gene Family Method
AT2G17790	ZIP3, VPS35A	VPS35 homolog A	0.03	OrthoFinder output from all 47 species
Aev_g16183	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Ceric.32G026000.1	VPS35B, Ceric.32G026000	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Cre01.g029650	ZIP3, VPS35A	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
Dcu_g44008	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Ehy_g26909	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01009948001	VPS35B	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
GSVIVT01018728001	VPS35B	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
LOC_Os03g58700.1	VPS35B, LOC_Os03g58700	component VPS35 of Retromer protein recycling complex	0.03	OrthoFinder output from all 47 species
Lfl_g08397	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.04	OrthoFinder output from all 47 species
Ore_g08613	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Smo167991	VPS35B	Vesicle trafficking.endomembrane trafficking.protein...	0.02	OrthoFinder output from all 47 species
Solyc02g083560.3.1	ZIP3, VPS35A,...	component VPS35 of Retromer protein recycling complex	0.03	OrthoFinder output from all 47 species
Solyc03g033400.4.1	ZIP3, VPS35A,...	component VPS35 of Retromer protein recycling complex	0.02	OrthoFinder output from all 47 species
Zm00001e006031_P002	VPS35B, Zm00001e006031	component VPS35 of Retromer protein recycling complex	0.02	OrthoFinder output from all 47 species
Zm00001e011849_P003	VPS35B, Zm00001e011849	component VPS35 of Retromer protein recycling complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	IEA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
CC	GO:0030906	retromer, cargo-selective complex	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005378	Vps35	18	754

External Links

No external refs found!

Ppi_g04632 (VPS35B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation