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  5. Ppi_g02424

Ppi_g02424 (LDL3)


Aliases : LDL3

Description : histone demethylase *(KDM1d) & original description: none


Gene families : OG0003426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g02424

Target Alias Description ECC score Gene Family Method Actions
AT4G16310 LDL3 LSD1-like 3 0.02 OrthoFinder output from all 47 species
Adi_g011994 LDL3 histone demethylase *(KDM1d) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g06185 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05833 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11027 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13453 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25574 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13129.t2 LDL3, Aspi01Gene13129 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66928.t1 LDL3, Aspi01Gene66928 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14216 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g23834 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G013700.1 LDL3, Ceric.04G013700 histone demethylase *(KDM1d) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.12G094400.1 LDL3, Ceric.12G094400 histone demethylase *(KDM1d) & original description:... 0.07 OrthoFinder output from all 47 species
Dcu_g10965 LDL3 histone demethylase *(KDM1d) & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g10966 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01702 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009833001 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.03 OrthoFinder output from all 47 species
GSVIVT01009834001 LDL3 Lysine-specific histone demethylase 1 homolog 3... 0.04 OrthoFinder output from all 47 species
Gb_40614 LDL3 lysine-specific demethylase (LDL3) 0.03 OrthoFinder output from all 47 species
Len_g47368 LDL3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04294 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
MA_120420g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g40775 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28867 LDL3 histone demethylase *(KDM1d) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11421 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15135 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36106 No alias histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g081100.3.1 LDL3, Solyc04g081100 lysine-specific demethylase (LDL3) 0.04 OrthoFinder output from all 47 species
Spa_g10310 LDL3 histone demethylase *(KDM1d) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26760 LDL3 histone demethylase *(KDM1d) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002184_P001 LDL3, Zm00001e002184 lysine-specific demethylase (LDL3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 304 364
IPR002937 Amino_oxidase 596 1066
No external refs found!