Ppi_g02310 (ATPUB45, PUB45)

Aliases : ATPUB45, PUB45

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0002832 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002832_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g02310
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AT1G27910	ATPUB45, PUB45	plant U-box 45	0.03	OrthoFinder output from all 47 species
Aev_g04833	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g10750	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g27084	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
Als_g51166	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene72640.t1	ATPUB45, PUB45,...	E3 ubiquitin ligase & original description: none	0.06	OrthoFinder output from all 47 species
Cba_g43192	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.08G047000.1	ATPUB45, PUB45,...	E3 ubiquitin ligase & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g07545	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.06	OrthoFinder output from all 47 species
Dac_g21635	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g06119	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g18855	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g22264	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Gb_40872	ATPUB45, PUB45	U-box domain-containing protein 6 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Len_g15193	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g04138	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g10053	No alias	E3 ubiquitin ligase & original description: none	0.06	OrthoFinder output from all 47 species
MA_100380g0010	ATPUB45, PUB45	U-box domain-containing protein 6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Nbi_g05453	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g06538	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16169	No alias	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g30427	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e007747_P003	ATPUB45, PUB45,...	U-box domain-containing protein 6 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e018944_P001	ATPUB45, PUB45,...	U-box domain-containing protein 45 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e041111_P003	ATPUB45, PUB45,...	U-box domain-containing protein 7 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008649	rRNA methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
BP	GO:0031167	rRNA methylation	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	HCCA
BP	GO:0070475	rRNA base methylation	IEP	HCCA
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	554	592
IPR003613	Ubox_domain	285	356

External Links

No external refs found!

Ppi_g02310 (ATPUB45, PUB45)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation