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  5. AMTR_s01196p00010070

AMTR_s01196p00010070 (PSBC,...)


Aliases : PSBC, evm_27.TU.AmTr_v1.0_scaffold01196.2

Description : Photosystem II CP43 reaction center protein OS=Carica papaya


Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s01196p00010070
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
ATCG00280 PSBC photosystem II reaction center protein C 0.12 OrthoFinder output from all 47 species
Aev_g04878 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.11 OrthoFinder output from all 47 species
Als_g01018 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Aob_g06735 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Cba_g32229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ceric.02G013100.1 PSBC, Ceric.02G013100 component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Ceric.12G058500.1 PSBC, Ceric.12G058500 not classified & original description: pacid=50601680... 0.05 OrthoFinder output from all 47 species
Ceric.12G087100.1 PSBC, Ceric.12G087100 not classified & original description: pacid=50602384... 0.07 OrthoFinder output from all 47 species
Ceric.1Z161200.1 PSBC, Ceric.1Z161200 component *(PsbC/CP43) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Ceric.24G024100.1 PSBC, Ceric.24G024100 component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ceric.33G053900.1 PSBC, Ceric.33G053900 not classified & original description: pacid=50607717... 0.09 OrthoFinder output from all 47 species
Ceric.36G045000.1 PSBC, Ceric.36G045000 not classified & original description: pacid=50568984... 0.08 OrthoFinder output from all 47 species
Ceric.38G009700.1 PSBC, Ceric.38G009700 component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ceric.38G040900.1 PSBC, Ceric.38G040900 not classified & original description: pacid=50580441... 0.02 OrthoFinder output from all 47 species
Dac_g04293 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Dcu_g10666 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Dde_g30384 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01006662001 PSBC Photosystem II CP43 reaction center protein OS=Platanus... 0.07 OrthoFinder output from all 47 species
GSVIVT01027074001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_06826 PSBC Photosystem II CP43 reaction center protein OS=Cycas... 0.08 OrthoFinder output from all 47 species
Gb_11943 PSBC Photosystem II CP43 reaction center protein... 0.07 OrthoFinder output from all 47 species
Gb_19153 PSBC Photosystem II CP43 reaction center protein... 0.08 OrthoFinder output from all 47 species
Gb_19166 PSBC Photosystem II CP43 reaction center protein... 0.05 OrthoFinder output from all 47 species
Gb_22672 PSBC Photosystem II CP43 reaction center protein... 0.07 OrthoFinder output from all 47 species
LOC_Os02g24632.1 PSBC, LOC_Os02g24632 component PsbC/CP43 of PS-II reaction center complex 0.15 OrthoFinder output from all 47 species
LOC_Os04g16874.1 PSBC, LOC_Os04g16874 component PsbC/CP43 of PS-II reaction center complex 0.14 OrthoFinder output from all 47 species
LOC_Os10g21212.1 PSBC, LOC_Os10g21212 component PsbC/CP43 of PS-II reaction center complex 0.13 OrthoFinder output from all 47 species
Len_g16437 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.02 OrthoFinder output from all 47 species
Lfl_g10242 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Msp_g00655 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Nbi_g01251 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.01 OrthoFinder output from all 47 species
Ore_g02105 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.08 OrthoFinder output from all 47 species
Pnu_g00846 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Ppi_g02376 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002255 PSBC not classified & original description: CDS=1-627 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004817 PSBC not classified & original description: CDS=1-717 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006637 PSBC not classified & original description: CDS=1-525 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006638 PSBC not classified & original description: CDS=1-420 0.07 OrthoFinder output from all 47 species
Sam_g14692 No alias component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Smo137689 PSBC Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.11 OrthoFinder output from all 47 species
Solyc00g230070.1.1 PSBC, Solyc00g230070 Photosystem II CP43 reaction center protein OS=Lepidium... 0.02 OrthoFinder output from all 47 species
Solyc00g500054.1.1 PSBC, Solyc00g500054 component PsbD/D2 of PS-II reaction center complex.... 0.11 OrthoFinder output from all 47 species
Solyc00g500136.1.1 PSBC, Solyc00g500136 component PsbD/D2 of PS-II reaction center complex.... 0.11 OrthoFinder output from all 47 species
Solyc00g500206.1.1 PSBC, Solyc00g500206 component PsbD/D2 of PS-II reaction center complex.... 0.11 OrthoFinder output from all 47 species
Solyc05g041230.1.1 PSBC, Solyc05g041230 Photosystem II CP43 reaction center protein... 0.01 OrthoFinder output from all 47 species
Solyc07g009000.1.1 PSBC, Solyc07g009000 Photosystem II CP43 reaction center protein OS=Coffea... 0.03 OrthoFinder output from all 47 species
Solyc12g027550.2.1 PSBC, Solyc12g027550 Photosystem II CP43 reaction center protein OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Tin_g01229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.01 OrthoFinder output from all 47 species
Zm00001e042042_P001 PSBC, Zm00001e042042 Photosystem II CP43 reaction center protein OS=Sorghum... 0.05 OrthoFinder output from all 47 species
Zm00001e042157_P001 PSBC, Zm00001e042157 Photosystem II CP43 reaction center protein OS=Sorghum... 0.02 OrthoFinder output from all 47 species
Zm00001e042269_P001 PSBC, Zm00001e042269 Photosystem II CP43 reaction center protein OS=Sorghum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
BP GO:0042773 ATP synthesis coupled electron transport IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 317
IPR000932 PS_antenna-like 351 382
No external refs found!