AMTR_s00543p00012290 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00543.3

Description : NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica

Gene families : OG0002858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002858_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00543p00012290
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
ATCG00890	NDHB.1	NADH-Ubiquinone/plastoquinone (complex I) protein	0.13	OrthoFinder output from all 47 species
ATCG01250	NDHB.2	NADH-Ubiquinone/plastoquinone (complex I) protein	0.13	OrthoFinder output from all 47 species
Aev_g13772	NDHB.1	component *(NdhB) of NDH membrane subcomplex M &...	0.11	OrthoFinder output from all 47 species
Ala_g08110	NDHB.1	component *(NdhB) of NDH membrane subcomplex M &...	0.02	OrthoFinder output from all 47 species
Als_g09956	NDHB.1	component *(NdhB) of NDH membrane subcomplex M &...	0.02	OrthoFinder output from all 47 species
Als_g16648	NAD2B, NAD2.2, NAD2	component *(ND2/NQO14) of NADH dehydrogenase proton...	0.02	OrthoFinder output from all 47 species
Aob_g05863	NDHB.1	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Ceric.01G057300.1	NDHB.1, Ceric.01G057300	component *(NdhB) of NDH membrane subcomplex M &...	0.05	OrthoFinder output from all 47 species
Ceric.05G040600.1	NDHB.1, Ceric.05G040600	not classified & original description: pacid=50579146...	0.05	OrthoFinder output from all 47 species
Ceric.26G042200.1	NDHB.1, Ceric.26G042200	component *(NdhB) of NDH membrane subcomplex M &...	0.05	OrthoFinder output from all 47 species
Ceric.29G005900.1	NDHB.1, Ceric.29G005900	not classified & original description: pacid=50624802...	0.07	OrthoFinder output from all 47 species
Ceric.29G006000.1	NDHB.1, Ceric.29G006000	not classified & original description: pacid=50625919...	0.03	OrthoFinder output from all 47 species
Dcu_g42753	NDHB.1	component *(NdhB) of NDH membrane subcomplex M &...	0.02	OrthoFinder output from all 47 species
GSVIVT01007203001	NAD2B, NAD2.2, NAD2	NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris	0.05	OrthoFinder output from all 47 species
Gb_06313	No alias	NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia...	0.02	OrthoFinder output from all 47 species
Gb_17281	NDHB.1	NAD(P)H-quinone oxidoreductase subunit 2 B,...	0.07	OrthoFinder output from all 47 species
Gb_18608	No alias	NAD(P)H-quinone oxidoreductase subunit 2 B,...	0.07	OrthoFinder output from all 47 species
Gb_26088	No alias	NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Gb_26291	NDHB.1	component NdhB of NDH membrane subcomplex M	0.07	OrthoFinder output from all 47 species
LOC_Os04g16854.1	NDHB.1, LOC_Os04g16854	component NdhB of NDH membrane subcomplex M	0.01	OrthoFinder output from all 47 species
LOC_Os07g25004.1	NDHB.1, LOC_Os07g25004	component NdhB of NDH membrane subcomplex M	0.14	OrthoFinder output from all 47 species
LOC_Os08g15248.1	NDHB.1, LOC_Os08g15248	component NdhB of NDH membrane subcomplex M	0.14	OrthoFinder output from all 47 species
Lfl_g33043	NDHB.1	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Lfl_g33049	NDHB.1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g25819	NAD2B, NAD2.2, NAD2	component *(ND2/NQO14) of NADH dehydrogenase proton...	0.04	OrthoFinder output from all 47 species
Ore_g01088	NDHB.1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g56892	NDHB.1	component *(NdhB) of NDH membrane subcomplex M &...	0.04	OrthoFinder output from all 47 species
Sam_g15901	No alias	component *(ND2/NQO14) of NADH dehydrogenase proton...	0.03	OrthoFinder output from all 47 species
Smo137726	NDHB.1	Photosynthesis.photophosphorylation.chlororespiration.NAD...	0.08	OrthoFinder output from all 47 species
Solyc00g500146.1.1	NDHB.1, Solyc00g500146	NAD(P)H-quinone oxidoreductase subunit 2 B,...	0.09	OrthoFinder output from all 47 species
Solyc00g500299.1.1	NDHB.1, Solyc00g500299	NAD(P)H-quinone oxidoreductase subunit 2 B,...	0.02	OrthoFinder output from all 47 species
Solyc00g500314.1.1	Solyc00g500314	NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris...	0.03	OrthoFinder output from all 47 species
Solyc01g017170.1.1	NDHB.1, Solyc01g017170	NAD(P)H-quinone oxidoreductase subunit 2 A,...	0.02	OrthoFinder output from all 47 species
Solyc03g063500.1.1	Solyc03g063500	NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc03g122010.1.1	NDHB.1, Solyc03g122010	NAD(P)H-quinone oxidoreductase subunit 2 B,...	0.1	OrthoFinder output from all 47 species
Solyc09g050069.1.1	NDHB.1, Solyc09g050069	NAD(P)H-quinone oxidoreductase subunit 2 A,...	0.1	OrthoFinder output from all 47 species
Solyc09g050070.1.1	NDHB.1, Solyc09g050070	NAD(P)H-quinone oxidoreductase subunit 2 A,...	0.08	OrthoFinder output from all 47 species
Solyc10g061887.1.1	NDHB.1, Solyc10g061887	component NdhB of NDH membrane subcomplex M	0.11	OrthoFinder output from all 47 species
Solyc11g021090.3.1	NDHB.1, Solyc11g021090	NAD(P)H-quinone oxidoreductase subunit 2 B,...	0.1	OrthoFinder output from all 47 species
Solyc11g021110.3.1	NDHB.1, Solyc11g021110	NAD(P)H-quinone oxidoreductase subunit 2 B,...	0.05	OrthoFinder output from all 47 species
Solyc12g033020.1.1	NDHB.1, Solyc12g033020	NAD(P)H-quinone oxidoreductase subunit 2 B,...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003954	NADH dehydrogenase activity	None	Extended
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	None	Extended
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0022904	respiratory electron transport chain	None	Extended
BP	GO:0042773	ATP synthesis coupled electron transport	IEA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0050136	NADH dehydrogenase (quinone) activity	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001750	ND/Mrp_mem	2	77

External Links

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AMTR_s00543p00012290 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation