AMTR_s00390p00012910 (RPOC2,...)

Aliases : RPOC2, evm_27.TU.AmTr_v1.0_scaffold00390.4

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS2 component

Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00390p00012910
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
ATCG00170	RPOC2	DNA-directed RNA polymerase family protein	0.13	OrthoFinder output from all 47 species
Aev_g15088	RPOC2	core component *(RpoC2) of plastid-encoded RNA...	0.11	OrthoFinder output from all 47 species
Ceric.02G012700.1	RPOC2, Ceric.02G012700	core component *(RpoC2) of plastid-encoded RNA...	0.04	OrthoFinder output from all 47 species
Ceric.06G046000.1	RPOC2, Ceric.06G046000	not classified & original description: pacid=50620845...	0.08	OrthoFinder output from all 47 species
Ceric.32G060700.1	RPOC2, Ceric.32G060700	not classified & original description: pacid=50597350...	0.09	OrthoFinder output from all 47 species
Ceric.38G010100.1	RPOC2, Ceric.38G010100	core component *(RpoC2) of plastid-encoded RNA...	0.02	OrthoFinder output from all 47 species
Ceric.38G010200.1	RPOC2, Ceric.38G010200	not classified & original description: pacid=50579905...	0.08	OrthoFinder output from all 47 species
GSVIVT01017094001	RPOC2	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.05	OrthoFinder output from all 47 species
GSVIVT01019173001	RPOC2	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.01	OrthoFinder output from all 47 species
GSVIVT01032753001	RPOC2	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.04	OrthoFinder output from all 47 species
Gb_26285	RPOC2	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.02	OrthoFinder output from all 47 species
LOC_Os04g16830.1	RPOC2, LOC_Os04g16830	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.07	OrthoFinder output from all 47 species
Mp1g00060.1	RPOC2	RpoC2 core component plastid-encoded RNA polymerase	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027467	RPOC2	not classified & original description: CDS=1-840	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027468	RPOC2	not classified & original description: CDS=1-702	0.07	OrthoFinder output from all 47 species
Solyc00g500052.1.1	RPOC2, Solyc00g500052	RpoC1 core component plastid-encoded RNA polymerase....	0.07	OrthoFinder output from all 47 species
Solyc00g500135.1.1	RPOC2, Solyc00g500135	RpoC1 core component plastid-encoded RNA polymerase....	0.07	OrthoFinder output from all 47 species
Solyc00g500205.1.1	RPOC2, Solyc00g500205	RpoC1 core component plastid-encoded RNA polymerase....	0.07	OrthoFinder output from all 47 species
Solyc00g500290.1.1	RPOC2, Solyc00g500290	RpoC2 core component plastid-encoded RNA polymerase	0.05	OrthoFinder output from all 47 species
Solyc01g056840.1.1	RPOC2, Solyc01g056840	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e042169_P001	RPOC2, Zm00001e042169	RpoC2 core component plastid-encoded RNA polymerase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006754	ATP biosynthetic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009142	nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009152	purine ribonucleotide biosynthetic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015078	proton transmembrane transporter activity	IEA	Interproscan
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
BP	GO:0015986	proton motive force-driven ATP synthesis	IEA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEA	Interproscan
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0042773	ATP synthesis coupled electron transport	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	96	157
IPR001865	Ribosomal_S2	1381	1594
IPR000568	ATP_synth_F0_asu	1614	1728
IPR007066	RNA_pol_Rpb1_3	10	62
IPR007081	RNA_pol_Rpb1_5	172	362
IPR007081	RNA_pol_Rpb1_5	1176	1261

External Links

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AMTR_s00390p00012910 (RPOC2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation