1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00252p00015420

AMTR_s00252p00015420 (SVL4,...)


Aliases : SVL4, evm_27.TU.AmTr_v1.0_scaffold00252.2

Description : Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana


Gene families : OG0002387 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00252p00015420
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00174750 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL3... 0.04 OrthoFinder output from all 47 species
AT1G66970 SVL2 SHV3-like 2 0.02 OrthoFinder output from all 47 species
AT3G20520 SVL3 SHV3-like 3 0.03 OrthoFinder output from all 47 species
AT4G26690 GPDL2, SHV3, MRH5 PLC-like phosphodiesterase family protein 0.1 OrthoFinder output from all 47 species
AT5G55480 SVL1 SHV3-like 1 0.03 OrthoFinder output from all 47 species
AT5G58050 SVL4 SHV3-like 4 0.15 OrthoFinder output from all 47 species
AT5G58170 SVL5 SHV3-like 5 0.13 OrthoFinder output from all 47 species
Adi_g059201 SVL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g40029 GPDL2, SHV3, MRH5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05086 SVL5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14503 SVL5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08832 SVL4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0064.g035674 SVL5 not classified & original description: CDS=1-2358 0.05 OrthoFinder output from all 47 species
Ceric.08G056600.1 SVL5, Ceric.08G056600 not classified & original description: pacid=50637619... 0.05 OrthoFinder output from all 47 species
Ceric.17G055700.1 Ceric.17G055700 not classified & original description: pacid=50617584... 0.02 OrthoFinder output from all 47 species
Dcu_g15330 GPDL2, SHV3, MRH5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23324 SVL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07994 SVL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003731001 SVL5 Glycerophosphodiester phosphodiesterase GDPDL6... 0.17 OrthoFinder output from all 47 species
GSVIVT01037754001 SVL1 Glycerophosphodiester phosphodiesterase GDPDL4... 0.01 OrthoFinder output from all 47 species
Gb_10598 SVL1 Glycerophosphodiester phosphodiesterase GDPDL4... 0.04 OrthoFinder output from all 47 species
Gb_18319 SVL1 Glycerophosphodiester phosphodiesterase GDPDL4... 0.04 OrthoFinder output from all 47 species
LOC_Os02g09450.1 SVL5, LOC_Os02g09450 Glycerophosphodiester phosphodiesterase GDPDL7... 0.2 OrthoFinder output from all 47 species
LOC_Os02g37590.1 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL3... 0.02 OrthoFinder output from all 47 species
LOC_Os04g39610.1 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL4... 0.04 OrthoFinder output from all 47 species
LOC_Os09g17000.1 SVL2, LOC_Os09g17000 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.04 OrthoFinder output from all 47 species
Len_g08984 SVL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02261 SVL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g20356 SVL2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g24535 SVL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434415g0020 SNC4 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.02 OrthoFinder output from all 47 species
MA_10435620g0010 SVL1 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.02 OrthoFinder output from all 47 species
Mp8g07940.1 SVL5 Glycerophosphodiester phosphodiesterase GDPDL7... 0.03 OrthoFinder output from all 47 species
Msp_g26126 SVL5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g10791 SVL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05893 SVL5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021443 SVL5 not classified & original description: CDS=22-1383 0.03 OrthoFinder output from all 47 species
Sam_g17680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g014490.4.1 SVL4, Solyc02g014490 Glycerophosphodiester phosphodiesterase GDPDL7... 0.17 OrthoFinder output from all 47 species
Solyc02g014530.4.1 SVL4, Solyc02g014530 Glycerophosphodiester phosphodiesterase GDPDL6... 0.14 OrthoFinder output from all 47 species
Solyc07g065120.3.1 SVL1, Solyc07g065120 Glycerophosphodiester phosphodiesterase GDPDL4... 0.05 OrthoFinder output from all 47 species
Solyc12g014570.2.1 SVL1, Solyc12g014570 Glycerophosphodiester phosphodiesterase GDPDL4... 0.03 OrthoFinder output from all 47 species
Spa_g21490 SVL5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40260 SVL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e014970_P001 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL3... 0.03 OrthoFinder output from all 47 species
Zm00001e022839_P001 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL3... 0.02 OrthoFinder output from all 47 species
Zm00001e024367_P002 SVL1, Zm00001e024367 Glycerophosphodiester phosphodiesterase GDPDL4... 0.03 OrthoFinder output from all 47 species
Zm00001e025069_P001 SVL5, Zm00001e025069 Glycerophosphodiester phosphodiesterase GDPDL7... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006071 glycerol metabolic process IEA Interproscan
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!